A TRIBUTE TO THE REAL IRON MAN

Long post, not food related.

If you’ve been following my blog over the years, you probably know a few things about my husband, Phil. He cooks dinner every other day. He is an avid (and pretty darn good) golfer. He is a biochemist and a Professor at Kansas State University. But maybe there a few things you don’t know. And I am here to share them with you, as we approach the day we’ll both retire from academia and research. Things I admire and cherish about the man who started as a co-worker and became my very best perfect match.

Maybe one of the things I admire the most. Quite often, in academia, faculty members subscribe to the idea that a graduate (or undergraduate) student should be solely responsible for their progress. In other words, they have high expectations and sets of rules to accept a student into their research group. Phil has a completely different approach. To join our group, all that he expected was enthusiasm for our research subject and the commitment to work hard. Anything else would be irrelevant. I’ve been around scientists from many parts of the world, and I can tell you, this is not usual. But it is absolutely wonderful, and super gratifying.


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Phil has devoted his whole scientific career to a single subject: understand how bacteria capture iron from the environment. In the microbiological world, Escherichia coli is by far the most studied bacteria, and his decades of research revolved around a fascinating protein (FepA) that resides in the membrane of E.coli and scavenges iron with tremendous efficiency. I’ve been working in research since I was 20 years old. Phil started when he was 24. I’ve changed subjects several times, from genetic instability in Proteus mirabilis (my PhD thesis in Brazil), to bacterial flagellin, biotechnology of vaccines, and a decade after that I joined Phil’s research on iron uptake. Phil has been fascinated and absolutely committed to iron for all these years. I tell you a little story from our days working at Oklahoma University, in Norman.

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We had undergraduates, graduate students and a wonderful pos-doc (Marvin Payne, first author of this article). Some students stayed with us for several years, completed their thesis, some left for one reason or another. One of the students who left came back to visit us maybe 4 or 5 years down the line. He had left science to get what he called “a real job”. During his visit, he asked me “sooo, you guys STILL work on FepA and all that iron stuff?” There was as a clear derogatory tone, it was a snide remark by definition, as if only fools would “still” be doing the same old stuff. I just smiled, and said that yes, we were still working on it and still pretty excited about it all. Today, probably 20 years have passed and I can say that what that former student considered a flaw, I find the definition of awesome… To devote your career to figuring out a mechanism because you are so intrigued and so fascinated by it? It is what makes waking up every day and go to work absolutely worth it. Quite likely because of his passion and commitment for the subject, Phil has developed this amazing ability to visualize the bacterial receptor and devise the right experiments to answer the most relevant questions. He expanded our research into new areas, joining biophysics, fluorescence spectroscopy, 3D imaging, in ways that sometimes made me a bit insecure and almost skeptical – should we really venture into this totally new experimental area? His answer was always: why not? it will be fun… And he has been right, every single time.

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This is a real big one. In academia, you are evaluated by how many papers you publish per year. Most scientists will try to spread their findings into several articles, to increase that number. Phil has refused to do it from the very beginning of his career. He had zero interest in numbers but instead went for publications that would tell the most complete story possible. Our late friend and collaborator Alain Charbit, from Institut Pasteur, used to joke that we did not publish papers, we published treatises… I confess that at times I tried to convince Phil to change his ways on this, but I am glad he never did.

And speaking of publications, what might end up as our last scientific paper was accepted for publication by the International Journal of Molecular Sciences. Just the two of us as authors, which in a way makes it even more special…

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About a week ago, Phil gave his final seminar at Kansas State University, in which he covered all he did during the past 50 years (!!!!) working on iron uptake. To give you an idea of how much things changed, this was the way bacterial membrane was depicted in 1975, when he started working on his PhD in Berkeley with Dr. Joe Neilands (not only was he an amazing scientist, but a raging liberal, once stood side by side with Jane Fonda in Vietnam to protest the war).

And this is how we visualize it now, with all the proteins that have been crystallized (in other words, their tri-dimensional structures defined and shown in detail). In the figure, OM stands for outer membrane, and IM is inner membrane. Bacteria such as E.coli have two membranes surrounding the cell. They are unicellular organisms.

We have never worked with crystallography, so no credit goes to our group for the structures shown above, but thanks to the availability of the structures, we could devise experiments to shed light on the mechanism of iron transport. In his talk, Phil gave credit to all the students and pos docs who did the work over the years. I share just a few here.

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He closed the seminar, not with the usual – thanking funding agencies for their financial support – but instead thanking those who helped him become the scientist he is today.

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It was an amazing seminar. A real wonderful way to wrap things up. Our retirement is set for the last week of May, but we have a couple of experiments planned because… why not? It will be FUN! As we get ready for a new phase in our life, I have a ton of mixed emotions, but one thing is certain, I look forward to enjoying life with my Iron Man.

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ONE YEAR AGO: Faye Palmqvist and Mini-Loaf Cakes

TWO YEARS AGO: For the Love of Broccoli

THREE YEARS AGO: Spanakopita, Crackers and the Adventure of Phyllo Dough

FOUR YEARS AGO: Chicken Noodle Soup

FIVE YEARS AGO: Floral Chocolate Stick Cookies

SIX YEARS AGO: Sally’s Spicy Mango and Coconut Macarons

SEVEN YEARS AGO: Bouillabaise for a Chilly Evening

EIGHT YEARS AGO: Bergamot-Cherry Macarons

NINE YEARS AGO: Roasted Veggies with Queso Cotija Dressing

TEN YEARS AGO: Creamy Broccoli and Mushroom Casserole

ELEVEN YEARS AGO: Maple Walnut Biscotti

TWELVE YEARS AGO: Barley Risotto with Peas

THIRTEEN YEARS AGO: Oatmeal Fudge Bars

FOURTEEN YEARS AGO: Cauliflower Steaks

FIFTEEN YEARS AGO: Soft Spot for Chevre

SIXTEEN YEARS AGO: Quick sun-dried Tomato Crostini

FIVE MINUTES IN L.I.T.

L.I.T., you ask? Well, that stands for Laboratory of Iron Transport, and it’s where I spend most of my waking hours. In brief, we study how bacteria such as Escherichia coli and Listeria monocytogenes get iron from the environment and “swallow it up.” The metal is indispensable for bacteria as well as all other living organisms to survive, but it is very tricky to obtain. Iron can be compared to money in the sense that everyone who has it tries to protect it from being taken away. However, bacteria developed sophisticated systems to do just that: steal the iron from you and use it to survive. Since all pathogenic bacteria need to obtain iron to cause disease, we hope that our research will lead to the discovery of new weapons to fight infections.

We thought – actually, let me give full credit to Phil for that – he thought it would be fun to walk through the lab and ask what each person was doing, in an informal and fun way.  Unfortunately, two of our undergrad students were not available when the video was made: Noah Long and Dallas Hyder. It was tricky enough to get everyone else there at the same time. I think the video turned out pretty good, as it was totally improvised.

Check it out here.

It makes me very sad to see Brittany Nairn, our super star Research Professor, getting ready to leave our group. She is the person who shows up in the video once Phil goes through a closed-door to our darkened “Fluorescence Spectroscopy Room.” We wish she could stay longer as a member of our team, but unfortunately that’s not possible.    She will go on to write her own story, and we know she will be successful and happy no matter the path life takes her. Our whole lab will miss her terribly…

CREDITS IN ORDER OF APPEARANCE

Yan Shipelskiy – Graduate student working super hard to develop a full system of evaluation of iron uptake in Gram-positive bacteria

Olivia Eliasson – Undergrad student working with Dr. Nairn to evaluate compounds with anti-bacterial activity linked to blocking of iron uptake

Dr. Somnath Chakravorty – Post-doc who recently joined our lab, working on iron uptake genes from Klebsiella pneumoniae

Aritri Majumdar – Graduate student performing very tricky experiments to evaluate the effect of bacterial membrane integrity on iron uptake

Ashish Somvanshi – Graduate student who just joined our lab, also working on iron uptake by Klebsiella pneumoniae

Dr. Brittany Nairn – Research Professor who joined our lab in August last year, and developed from scratch a whole system to evaluate iron uptake in a pathogen called Acinetobacter baumannii

Dr. Sally Newton – yours truly, molecular biologist by day, food blogger by night. Performing her favorite type of experiment using radioactive iron. Because, you know… some like it hot!

Director, Producer and Narrator,  Dr. Phillip Klebba… My favorite scientist in the whole wide world!

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Our undergrad student Noah Long, missing from the video, but proudly showing the results of his labor: the best batch of enterobactin ever purified in our lab!  How cool is that look?

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Before I leave, I invite you to watch this video of Dr. Phil Klebba explaining in more detail the research of our group. Sorry, ladies, he is already taken.

 

 

 

OUR WORK IN THE NEWS!

Our latest publication in the Journal of General Physiology, made the cover of the magazine, and also got us a press-release online… We are thrilled!  

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For the press-release, click here.

“If we can understand exactly how this acquisition process works, we can design, isolate or identify small molecules that inhibit the iron uptake process. Those are potentially antimicrobial agents that could protect people and animals against bacterial disease.”

 (Phillip Klebba, Professor and Head of Biochemistry and Molecular Biophysics, Kansas State University)